PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000848.1_g00023.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 170aa    MW: 19174.7 Da    PI: 9.1385
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000848.1_g00023.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.92.2e-172877255
                      AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                              ykG+r +k +g+WvAeIr+p   +kr r++lg++ t+  Aa+a++ a  +l+g
  Itr_sc000848.1_g00023.1 28 PYKGIRMRK-WGKWVAEIREP---NKRSRIWLGSYSTPVAAARAYDTAVYYLRG 77
                             59*****99.**********9...336*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003804.1E-372891IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-292886IPR001471AP2/ERF domain
PROSITE profilePS5103221.9042885IPR001471AP2/ERF domain
PfamPF008479.2E-112977IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-202986IPR016177DNA-binding domain
PRINTSPR003673.3E-112940IPR001471AP2/ERF domain
CDDcd000186.37E-262987No hitNo description
PRINTSPR003673.3E-116787IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MNLKGEKMEM EGEVVGPCCS EKRKNERPYK GIRMRKWGKW VAEIREPNKR SRIWLGSYST  60
PVAAARAYDT AVYYLRGPSA RLNFPELLVS DGAGLSDLSA ASIRKRAVEV GARVDAIQTS  120
LGGHDRRPYK ARDGERASPC ATQLKPCWFQ EKPDLNEKPE PEDPDSGDYW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-142792469ATERF1
3gcc_A3e-142792469ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00276DAPTransfer from AT2G23340Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010315978.11e-81PREDICTED: ethylene-responsive transcription factor ERF011
RefseqXP_015066067.11e-81PREDICTED: ethylene-responsive transcription factor RAP2-10
SwissprotO221741e-52ERF08_ARATH; Ethylene-responsive transcription factor ERF008
TrEMBLA0A0V0INJ82e-81A0A0V0INJ8_SOLCH; Putative ethylene-responsive transcription factor RAP2-10-like
TrEMBLM0ZXP82e-81M0ZXP8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000102285e-81(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9432390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23340.19e-54DREB and EAR motif protein 3